Research workbench
T. gondii myosin a trimeric complex with ELC1, calcium-free
Analyse T. gondii myosin a trimeric complex with ELC1, calcium-free in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6TJ6
- Type
- protein
- Length
- 310 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Calmodulin, putative; Myosin light chain TGMLC1; Myosin a
- UniProt
- A0A0F7UZ05, Q95UJ7, S8G527
- Pockets
- 2 · best druggability 0.43
Structure
x-ray diffraction · 3 distinct chains · 63% helix, 7% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Calmodulin, putative | protein | 131 | 58% helix, 8% strand | A0A0F7UZ05 |
| B | Myosin light chain TGMLC1 | protein | 136 | 59% helix, 9% strand | Q95UJ7 |
| C | Myosin a | protein | 43 | 88% helix, 0% strand | S8G527 |
Ligands and binding sites
- IMD · Imidazole · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 66 | 0.43 | 0.82 | 16 | empty |
| 2 | 132 | 0.40 | 0.74 | 17 | empty |
Interfaces
3 interfaces between chains.
- B–C · 1324 Ų buried · 25 hydrogen bonds · protein-protein
- A–C · 1309 Ų buried · 11 hydrogen bonds · protein-protein
- A–B · 342 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 6TJ6 · T. gondii myosin A trimeric complex with ELC1, calcium-free · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0F7UZ05
- Every structure of UniProt Q95UJ7
- Every structure of UniProt S8G527
- Elsewhere: RCSB PDB 6TJ6 · PDBe 6TJ6 · UniProt A0A0F7UZ05 · UniProt Q95UJ7 · UniProt S8G527
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.