Research workbench
IE1 from rat cytomegalovirus
Analyse IE1 from rat cytomegalovirus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6TH1
- Type
- protein
- Length
- 360 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Immediate early protein 1
- UniProt
- O57046
- Pockets
- 3 · best druggability 0.39
Structure
x-ray diffraction · 1 distinct chain · 78% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| R | Immediate early protein 1 | protein | 360 | 78% helix, 0% strand | O57046 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 66 | 0.39 | 0.79 | 16 | empty |
| 2 | 63 | 0.34 | 0.77 | 12 | empty |
| 3 | 86 | 0.34 | 0.74 | 18 | empty |
Compared structures
- 6TH1 · IE1 from rat cytomegalovirus · the same entry in another collection · chain R against R, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O57046
- Elsewhere: RCSB PDB 6TH1 · PDBe 6TH1 · UniProt O57046
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