Research workbench
Tail-baseplate interface of native gta particle computed with C6 symmetry
Analyse Tail-baseplate interface of native gta particle computed with C6 symmetry in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6TEB
- Type
- protein
- Length
- 528 residues
- Chains
- 4
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tail tube protein RCC01691; Distal tail protein RCC01695
- UniProt
- D5ATZ7, D5AU01
- Pockets
- 2 · best druggability 0.70
Structure
electron microscopy · 2 distinct chains · 10% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Tail tube protein RCC01691 | protein | 130 | 8% helix, 43% strand | D5ATZ7 |
| D, C | Distal tail protein RCC01695 | protein | 134 | 11% helix, 19% strand | D5AU01 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 270 | 0.70 | 0.85 | 44 | empty |
| 2 | 125 | 0.48 | 0.79 | 21 | empty |
Interfaces
5 interfaces between chains.
- A–B · 1557 Ų buried · 22 hydrogen bonds · protein-protein
- D–C · 1341 Ų buried · 20 hydrogen bonds · protein-protein
- A–C · 553 Ų buried · 8 hydrogen bonds · protein-protein
- B–D · 521 Ų buried · 7 hydrogen bonds · protein-protein
- B–C · 137 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 6TEB · Tail-baseplate interface of native GTA particle computed with C6 symmetry · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D5ATZ7
- Every structure of UniProt D5AU01
- Elsewhere: RCSB PDB 6TEB · PDBe 6TEB · UniProt D5ATZ7 · UniProt D5AU01
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