Research workbench

BAM_5920CDD 5919NDD docking domains

Analyse BAM_5920CDD 5919NDD docking domains in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6TDM
Type: protein
Length: 128 residues
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Beta-ketoacyl SYNTHASE,BETA-ketoacyl synthase
UniProt: Q0B308, Q0B309
Pockets: 1 · best druggability 0.33

Structure

solution nmr · 1 distinct chain · 61% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Beta-ketoacyl SYNTHASE,BETA-ketoacyl synthase	protein	64	61% helix, 0% strand	Q0B308, Q0B309

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	65	0.33	0.76	18	empty

Interfaces

1 interface between chains.

A–B · 1443 Å² buried · 13 hydrogen bonds · protein-protein

Compared structures

6TDM · Bam_5920cDD 5919nDD docking domains · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q0B308
Every structure of UniProt Q0B309
Elsewhere: RCSB PDB 6TDM · PDBe 6TDM · UniProt Q0B308 · UniProt Q0B309

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