Research workbench
Makd from the mak operon of vibrio cholerae
Analyse Makd from the mak operon of vibrio cholerae in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6TCT
- Type
- protein
- Length
- 500 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Makd
- UniProt
- Q9KL67
- Pockets
- 3 · best druggability 0.40
Structure
x-ray diffraction · 1 distinct chain · 9% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B, D, A, C | Makd | protein | 125 | 9% helix, 49% strand | Q9KL67 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 137 | 0.40 | 0.74 | 32 | empty |
| 2 | 127 | 0.38 | 0.74 | 27 | empty |
| 3 | 60 | 0.27 | 0.73 | 18 | empty |
Interfaces
4 interfaces between chains.
- A–C · 1023 Ų buried · 12 hydrogen bonds · protein-protein
- B–D · 1021 Ų buried · 10 hydrogen bonds · protein-protein
- B–C · 46 Ų buried · 1 hydrogen bond · protein-protein
- D–A · 20 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 6TCT · MakD from the mak operon of Vibrio cholerae · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9KL67
- Elsewhere: RCSB PDB 6TCT · PDBe 6TCT · UniProt Q9KL67
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