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Glycosylated AA13 lytic polysaccharide monooxygenase from aspergillus oryzae in P1 space group

Analyse Glycosylated AA13 lytic polysaccharide monooxygenase from aspergillus oryzae in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6TBR
Type: protein
Length: 466 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: AOAA13
UniProt: Q2U8Y3
Ligands: ZN
Pockets: 2 · best druggability 0.35

Structure

x-ray diffraction · 1 distinct chain · 18% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	AOAA13	protein	233	18% helix, 28% strand	Q2U8Y3

Ligands and binding sites

ZN · Zinc ion · metal · 12 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	79	0.35	0.76	21	empty
2	55	0.27	0.74	15	empty

Interfaces

1 interface between chains.

A–B · 465 Å² buried · 14 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 14 disulfide, 2 modified (disulfide, methylation).

Compared structures

6TBR · Glycosylated AA13 Lytic polysaccharide monooxygenase from Aspergillus oryzae in P1 space… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q2U8Y3
Elsewhere: RCSB PDB 6TBR · PDBe 6TBR · UniProt Q2U8Y3

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