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The cytotoxin makb from vibrio cholerae

Analyse The cytotoxin makb from vibrio cholerae in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6T8D
Type: protein
Length: 355 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Makb
UniProt: Q9KL65
Ligands: SO4
Pockets: 2 · best druggability 0.66

Structure

x-ray diffraction · 1 distinct chain · 69% helix, 11% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
X	Makb	protein	355	69% helix, 11% strand	Q9KL65

Ligands and binding sites

SO4 · Sulfate ion · ion · 2 copies · chains X

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	382	0.66	0.80	33	empty
2	68	0.38	0.78	12	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

6T8D · The cytotoxin MakB from Vibrio cholerae · the same entry in another collection · chain X against X, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9KL65
Elsewhere: RCSB PDB 6T8D · PDBe 6T8D · UniProt Q9KL65

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