Research workbench
Structure of PCNA bound to cpip motif of DP2 from P. abyssi
Analyse Structure of PCNA bound to cpip motif of DP2 from P. abyssi in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6T7Y
- Type
- protein
- Length
- 247 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA polymerase sliding clamp; Cpip motif from the DP2 large subunit of pold
- EC
- 2.7.7.7
- UniProt
- Q9UYX8
- Pockets
- 3 · best druggability 0.74
Structure
x-ray diffraction · 2 distinct chains · 18% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA polymerase sliding clamp | protein | 238 | 18% helix, 48% strand | Q9UYX8 |
| B | Cpip motif from the DP2 large subunit of pold (EC 2.7.7.7) | protein | 9 | 0% helix, 11% strand | — |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 56 | 0.74 | 0.99 | 20 | empty |
| 2 | 130 | 0.43 | 0.76 | 22 | empty |
| 3 | 69 | 0.30 | 0.74 | 24 | empty |
Interfaces
1 interface between chains.
- A–B · 491 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UYX8
- Elsewhere: RCSB PDB 6T7Y · PDBe 6T7Y · UniProt Q9UYX8
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