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Structure of the rap conjugation gene regulator of the plasmid PLS20 in apo form

Analyse Structure of the rap conjugation gene regulator of the plasmid PLS20 in apo form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6T3H
Type: protein
Length: 713 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Response regulator aspartate phosphatase
UniProt: E9RIY6
Pockets: 11 · best druggability 0.84

Structure

x-ray diffraction · 2 distinct chains · 78% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Response regulator aspartate phosphatase	protein	357	79% helix, 0% strand	E9RIY6
B	Response regulator aspartate phosphatase	protein	356	78% helix, 0% strand	E9RIY6

Pockets

11 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	894	0.84	0.86	100	empty
2	396	0.63	0.78	25	empty
3	59	0.56	0.89	17	empty
4	190	0.53	0.78	32	empty
5	149	0.47	0.76	26	empty

Interfaces

1 interface between chains.

A–B · 1513 Å² buried · 20 hydrogen bonds · protein-protein

Compared structures

6T3H · Structure of the Rap conjugation gene regulator of the plasmid pLS20 in apo form · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt E9RIY6
Elsewhere: RCSB PDB 6T3H · PDBe 6T3H · UniProt E9RIY6

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