Research workbench
Crystal structure and activity studies of escherichia COLI yadb orf
Analyse Crystal structure and activity studies of escherichia COLI yadb orf in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1NZJ
- Type
- protein
- Length
- 273 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein yadb
- UniProt
- P27305
- Ligands
- ZN
- Pockets
- 1 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein yadb | protein | 273 | 41% helix, 16% strand | P27305 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 250 | 0.58 | 0.79 | 38 | empty |
Compared structures
- 1NZJ · Crystal Structure and Activity Studies of Escherichia Coli Yadb ORF · the same entry in another collection · chain A against A, TM-score 1.00
- P27305 · AlphaFold monomer V2.0 prediction for glutamyl-Q TRNA(ASP) synthetase (P27305) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P27305
- Elsewhere: RCSB PDB 1NZJ · PDBe 1NZJ · UniProt P27305
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