Research workbench
Adenovirus 15 fiber knob protein
Analyse Adenovirus 15 fiber knob protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6STW
- Type
- protein
- Length
- 569 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fiber protein
- UniProt
- P36847
- Pockets
- 5 · best druggability 0.80
Structure
x-ray diffraction · 2 distinct chains · 6% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Fiber protein | protein | 190 | 6% helix, 39% strand | P36847 |
| C | Fiber protein | protein | 189 | 6% helix, 40% strand | P36847 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 428 | 0.80 | 0.88 | 54 | empty |
| 2 | 105 | 0.51 | 0.82 | 28 | empty |
| 3 | 62 | 0.47 | 0.84 | 21 | empty |
| 4 | 109 | 0.43 | 0.78 | 32 | empty |
| 5 | 68 | 0.30 | 0.74 | 16 | empty |
Interfaces
3 interfaces between chains.
- B–C · 1169 Ų buried · 19 hydrogen bonds · protein-protein
- A–C · 1154 Ų buried · 17 hydrogen bonds · protein-protein
- A–B · 1152 Ų buried · 18 hydrogen bonds · protein-protein
Compared structures
- 6STW · Adenovirus 15 Fiber Knob protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P36847
- Elsewhere: RCSB PDB 6STW · PDBe 6STW · UniProt P36847
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