Research workbench
Crystal structure of the strawberry pathogenesis-related 10 (pr-10) fra a 1.02 protein, E46A D48A mutant
Analyse Crystal structure of the strawberry pathogenesis-related 10 (pr-10) fra a 1.02… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6STA
- Type
- protein
- Length
- 314 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Major strawberry allergen fra a 1-2
- UniProt
- D0E0C6
- Pockets
- 2 · best druggability 0.78
Structure
x-ray diffraction · 2 distinct chains · 28% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Major strawberry allergen fra a 1-2 | protein | 157 | 27% helix, 43% strand | D0E0C6 |
| B | Major strawberry allergen fra a 1-2 | protein | 157 | 29% helix, 42% strand | D0E0C6 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 867 | 0.78 | 0.81 | 65 | empty |
| 2 | 1030 | 0.78 | 0.79 | 74 | empty |
Interfaces
1 interface between chains.
- A–B · 268 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 6STA · Crystal structure of the strawberry pathogenesis-related 10 (PR-10) Fra a 1.02 protein… · the same entry in another collection · chain A against A, TM-score 1.00
- D0E0C6 · AlphaFold monomer V2.0 prediction for major strawberry allergen fra a 1-2 (D0E0C6) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D0E0C6
- Elsewhere: RCSB PDB 6STA · PDBe 6STA · UniProt D0E0C6
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