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X-ray crystal structure of protein YGGJ_HAEIN of haemophilus influenzae. northeast structural genomics consortium target IR73.
Analyse X-ray crystal structure of protein YGGJ_HAEIN of haemophilus influenzae.… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1NXZ
- Type
- protein
- Length
- 491 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein HI0303
- UniProt
- P44627
- Pockets
- 5 · best druggability 0.60
Structure
x-ray diffraction · 2 distinct chains · 30% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein HI0303 | protein | 246 | 31% helix, 25% strand | P44627 |
| B | Hypothetical protein HI0303 | protein | 245 | 29% helix, 24% strand | P44627 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 290 | 0.60 | 0.78 | 28 | empty |
| 2 | 232 | 0.58 | 0.79 | 25 | empty |
| 3 | 87 | 0.31 | 0.72 | 16 | empty |
| 4 | 58 | 0.30 | 0.75 | 12 | empty |
| 5 | 52 | 0.28 | 0.75 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 1841 Ų buried · 33 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 1NXZ · X-Ray Crystal Structure of Protein yggj_haein of Haemophilus influenzae. Northeast… · the same entry in another collection · chain A against A, TM-score 1.00
- P44627 · AlphaFold monomer V2.0 prediction for ribosomal RNA small subunit methyltransferase E… · a predicted model of the same protein · chain B against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P44627
- Elsewhere: RCSB PDB 1NXZ · PDBe 1NXZ · UniProt P44627
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