Research workbench
The vgrg spike from the type 6 secretion system
Analyse The vgrg spike from the type 6 secretion system in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6SK0
- Type
- protein
- Length
- 792 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative type VI secretion protein
- UniProt
- A0A3W2RZ19
- Pockets
- 3 · best druggability 0.35
Structure
electron microscopy · 1 distinct chain · 15% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Putative type VI secretion protein | protein | 264 | 15% helix, 48% strand | A0A3W2RZ19 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 54 | 0.35 | 0.79 | 23 | empty |
| 2 | 50 | 0.30 | 0.77 | 18 | empty |
| 3 | 55 | 0.29 | 0.76 | 18 | empty |
Interfaces
3 interfaces between chains.
- B–C · 7727 Ų buried · 205 hydrogen bonds · protein-protein
- A–B · 7725 Ų buried · 204 hydrogen bonds · protein-protein
- A–C · 7707 Ų buried · 203 hydrogen bonds · protein-protein
Compared structures
- 6SK0 · The VgrG spike from the Type 6 secretion system · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A3W2RZ19
- Elsewhere: RCSB PDB 6SK0 · PDBe 6SK0 · UniProt A0A3W2RZ19
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