Research workbench
N-terminal domain of drosophila X virus VP3
Analyse N-terminal domain of drosophila X virus VP3 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6SI6
- Type
- protein
- Length
- 98 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Structural polyprotein
- EC
- 3.4.21.-
- UniProt
- Q96724
Structure
x-ray diffraction · 2 distinct chains · 84% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Structural polyprotein (EC 3.4.21.-) | protein | 47 | 85% helix, 0% strand | Q96724 |
| B | Structural polyprotein (EC 3.4.21.-) | protein | 51 | 82% helix, 0% strand | Q96724 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 1714 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 6SI6 · N-terminal domain of Drosophila X virus VP3 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q96724
- Elsewhere: RCSB PDB 6SI6 · PDBe 6SI6 · UniProt Q96724
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