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Structure of the GH76A alpha-1,6-mannanase from salegentibacter sp. HEL1_6
Analyse Structure of the GH76A alpha-1,6-mannanase from salegentibacter sp. HEL1_6 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6SHD
- Type
- protein
- Length
- 1,014 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alpha-1,6-mannanase
- Pockets
- 10 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 63% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Alpha-1,6-mannanase | protein | 338 | 63% helix, 10% strand | — |
Pockets
10 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 216 | 0.61 | 0.81 | 25 | empty |
| 2 | 173 | 0.58 | 0.82 | 26 | empty |
| 3 | 208 | 0.57 | 0.80 | 26 | empty |
| 4 | 101 | 0.52 | 0.83 | 25 | empty |
| 5 | 150 | 0.51 | 0.79 | 24 | empty |
Interfaces
2 interfaces between chains.
- A–C · 475 Ų buried · 3 hydrogen bonds · protein-protein
- B–C · 465 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 6SHD · Structure of the GH76A alpha-1,6-mannanase from Salegentibacter sp. HEL1_6 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6SHD · PDBe 6SHD
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