Research workbench

Y830A mutant from mycoplasma genitalium P110 adhesin

Analyse Y830A mutant from mycoplasma genitalium P110 adhesin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6SE5
Type: protein
Length: 885 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Mgp-operon protein 3
UniProt: P22747
Ligands: K
Pockets: 9 · best druggability 0.80

Structure

x-ray diffraction · 1 distinct chain · 16% helix, 32% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Mgp-operon protein 3	protein	885	16% helix, 32% strand	P22747

Ligands and binding sites

K · Potassium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

9 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1019	0.80	0.81	99	empty
2	244	0.53	0.76	26	empty
3	106	0.45	0.79	22	empty
4	111	0.39	0.75	18	empty
5	70	0.39	0.78	16	empty

Compared structures

6SE5 · Y830A mutant from Mycoplasma genitalium P110 adhesin · the same entry in another collection · chain A against A, TM-score 1.00
P22747 · AlphaFold monomer V2.0 prediction for mgp-operon protein 3 (P22747) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P22747
Elsewhere: RCSB PDB 6SE5 · PDBe 6SE5 · UniProt P22747

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