Research workbench
34MER structure of the salmonella flagella ms-ring protein flif
Analyse 34MER structure of the salmonella flagella ms-ring protein flif in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6SD3
- Type
- protein
- Length
- 8,212 residues
- Chains
- 34
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Flagellar M-ring protein
- UniProt
- P15928
- Pockets
- 20 · best druggability 0.80
Structure
electron microscopy · 2 distinct chains · 30% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, R, S, T, U, V, W, X, Y, Z, a, b, c, d, e, f, g | Flagellar M-ring protein | protein | 247 | 32% helix, 22% strand | P15928 |
| Q, h | Flagellar M-ring protein | protein | 154 | 27% helix, 31% strand | P15928 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 754 | 0.80 | 0.84 | 77 | empty |
| 2 | 645 | 0.80 | 0.85 | 75 | empty |
| 3 | 933 | 0.80 | 0.82 | 83 | empty |
| 4 | 589 | 0.80 | 0.85 | 68 | empty |
| 5 | 1129 | 0.80 | 0.81 | 100 | empty |
Interfaces
47 interfaces between chains.
- L–M · 3429 Ų buried · 43 hydrogen bonds · protein-protein
- C–D · 3396 Ų buried · 46 hydrogen bonds · protein-protein
- T–U · 3378 Ų buried · 43 hydrogen bonds · protein-protein
- W–X · 3359 Ų buried · 40 hydrogen bonds · protein-protein
- f–g · 3355 Ų buried · 41 hydrogen bonds · protein-protein
Compared structures
- 6SD3 · 34mer structure of the Salmonella flagella MS-ring protein FliF · the same entry in another collection · chain J against J, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P15928
- Elsewhere: RCSB PDB 6SD3 · PDBe 6SD3 · UniProt P15928
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.