Research workbench
33MER structure of the salmonella flagella ms-ring protein flif
Analyse 33MER structure of the salmonella flagella ms-ring protein flif in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6SCN
- Type
- protein
- Length
- 7,875 residues
- Chains
- 33
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Flagellar M-ring protein
- UniProt
- A0A0D6FLL5
- Pockets
- 20 · best druggability 0.84
Structure
electron microscopy · 2 distinct chains · 29% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, L, M, N, O, P, Q, R, S, T, U, W, X, Y, Z, a, b, c, d, e, f | Flagellar M-ring protein | protein | 247 | 30% helix, 33% strand | A0A0D6FLL5 |
| K, V, g | Flagellar M-ring protein | protein | 155 | 26% helix, 41% strand | A0A0D6FLL5 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 825 | 0.84 | 0.87 | 101 | empty |
| 2 | 1173 | 0.82 | 0.83 | 122 | empty |
| 3 | 996 | 0.82 | 0.83 | 100 | empty |
| 4 | 959 | 0.81 | 0.83 | 102 | empty |
| 5 | 1027 | 0.81 | 0.83 | 99 | empty |
Interfaces
45 interfaces between chains.
- Q–R · 3483 Ų buried · 67 hydrogen bonds · protein-protein
- F–G · 3477 Ų buried · 67 hydrogen bonds · protein-protein
- b–c · 3474 Ų buried · 69 hydrogen bonds · protein-protein
- C–D · 3444 Ų buried · 59 hydrogen bonds · protein-protein
- Y–Z · 3403 Ų buried · 59 hydrogen bonds · protein-protein
Compared structures
- 6SCN · 33mer structure of the Salmonella flagella MS-ring protein FliF · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0D6FLL5
- Elsewhere: RCSB PDB 6SCN · PDBe 6SCN · UniProt A0A0D6FLL5
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.