Research workbench
Cdba form two
Analyse Cdba form two in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6SBX
- Type
- protein
- Length
- 157 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cdba
- UniProt
- Q1D489
- Pockets
- 2 · best druggability 0.46
Structure
x-ray diffraction · 3 distinct chains · 59% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cdba | protein | 54 | 57% helix, 17% strand | Q1D489 |
| C | Cdba | protein | 55 | 56% helix, 2% strand | Q1D489 |
| B | Cdba | protein | 48 | 65% helix, 21% strand | Q1D489 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 139 | 0.46 | 0.77 | 31 | empty |
| 2 | 54 | 0.35 | 0.78 | 13 | empty |
Interfaces
3 interfaces between chains.
- A–B · 2115 Ų buried · 42 hydrogen bonds · protein-protein
- C–B · 335 Ų buried · 6 hydrogen bonds · protein-protein
- A–C · 112 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 6SBX · CdbA Form Two · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q1D489
- Elsewhere: RCSB PDB 6SBX · PDBe 6SBX · UniProt Q1D489
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