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Salsa / DMBT1 / GP340 srcr domain 8 soaked in calcium and magnesium

Analyse Salsa / DMBT1 / GP340 srcr domain 8 soaked in calcium and magnesium in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6SAN
Type: protein
Length: 224 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Deleted in malignant brain tumors 1 protein
UniProt: Q9UGM3
Ligands: MG, CL

Structure

x-ray diffraction · 1 distinct chain · 14% helix, 29% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Deleted in malignant brain tumors 1 protein	protein	112	14% helix, 29% strand	Q9UGM3

Ligands and binding sites

MG · Magnesium ion · metal · 6 copies · chains A, B
CL · Chloride ion · ion · 2 copies · chains A, B
GOL · Glycerol · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 352 Å² buried · 4 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 8 disulfide (disulfide).

Compared structures

6SAN · SALSA / DMBT1 / GP340 SRCR domain 8 soaked in calcium and magnesium · the same entry in another collection · chain A against A, TM-score 1.00
Q9UGM3 · AlphaFold monomer V2.0 prediction for deleted in malignant brain tumors 1 protein (Q9UGM3) · a predicted model of the same protein · chain B against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9UGM3
Elsewhere: RCSB PDB 6SAN · PDBe 6SAN · UniProt Q9UGM3

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