Research workbench
NMR solution structure of hml-2 C-terminal dimer domain
Analyse NMR solution structure of hml-2 C-terminal dimer domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6SAI
- Type
- protein
- Length
- 186 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gag protein
- UniProt
- P87891
- Pockets
- 3 · best druggability 0.34
Structure
solution nmr · 1 distinct chain · 58% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Gag protein | protein | 93 | 58% helix, 0% strand | P87891 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 56 | 0.34 | 0.78 | 14 | empty |
| 2 | 74 | 0.33 | 0.75 | 21 | empty |
| 3 | 64 | 0.28 | 0.73 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 683 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 6SAI · NMR solution structure of Hml-2 C-terminal dimer domain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P87891
- Elsewhere: RCSB PDB 6SAI · PDBe 6SAI · UniProt P87891
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