Research workbench
Crystal structure of ssdp from D. melanogaster
Analyse Crystal structure of ssdp from D. melanogaster in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6S9R
- Type
- protein
- Length
- 121 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sequence-specific single-stranded DNA-binding protein, isoform a
- UniProt
- Q9VEB9
- Pockets
- 1 · best druggability 0.28
Structure
x-ray diffraction · 2 distinct chains · 67% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sequence-specific single-stranded DNA-binding protein, isoform a | protein | 60 | 65% helix, 0% strand | Q9VEB9 |
| B | Sequence-specific single-stranded DNA-binding protein, isoform a | protein | 61 | 69% helix, 0% strand | Q9VEB9 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 59 | 0.28 | 0.73 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 1346 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 6S9R · Crystal structure of SSDP from D. melanogaster · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9VEB9
- Elsewhere: RCSB PDB 6S9R · PDBe 6S9R · UniProt Q9VEB9
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