Research workbench

Arbitrium receptor from a bacillus subtilis KATMIRA33 phage

Analyse Arbitrium receptor from a bacillus subtilis KATMIRA33 phage in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6S7I
Type: protein
Length: 773 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Arbitrium receptor
Ligands: SO4
Pockets: 10 · best druggability 0.70

Structure

x-ray diffraction · 2 distinct chains · 72% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Arbitrium receptor	protein	387	72% helix, 0% strand	—
B	Arbitrium receptor	protein	386	73% helix, 0% strand	—

Ligands and binding sites

SO4 · Sulfate ion · ion · 4 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

10 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	710	0.70	0.77	53	SO4
2	575	0.69	0.78	50	empty
3	674	0.69	0.77	49	empty
4	116	0.51	0.81	18	empty
5	79	0.47	0.82	19	empty

Interfaces

1 interface between chains.

A–B · 1536 Å² buried · 21 hydrogen bonds · protein-protein

Compared structures

6S7I · Arbitrium receptor from a Bacillus subtilis Katmira33 phage · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6S7I · PDBe 6S7I

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.