Research workbench
Structure of the flipqr complex from the flagellar type 3 secretion system of pseudomonas savastanoi.
Analyse Structure of the flipqr complex from the flagellar type 3 secretion system of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6S3R
- Type
- protein
- Length
- 1,669 residues
- Chains
- 11
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Flagellar biosynthetic protein flip; Flagellar biosynthetic protein flir; Flagellar…
- UniProt
- Q48GF5, A0A0P9WRJ4, Q48GF6
- Pockets
- 20 · best druggability 0.86
Structure
electron microscopy · 5 distinct chains · 72% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Flagellar biosynthetic protein flip | protein | 196 | 71% helix, 0% strand | Q48GF5 |
| B, C, D, E | Flagellar biosynthetic protein flip | protein | 198 | 67% helix, 0% strand | Q48GF5 |
| F | Flagellar biosynthetic protein flir | protein | 252 | 67% helix, 0% strand | A0A0P9WRJ4 |
| G, H, I, J | Flagellar biosynthetic protein fliq | protein | 89 | 83% helix, 0% strand | Q48GF6 |
| K | Flagellar biosynthetic protein fliq | protein | 73 | 90% helix, 0% strand | Q48GF6 |
Pockets
20 pockets found on a 1 Å grid, 13 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 243 | 0.86 | 0.97 | 35 | empty |
| 2 | 290 | 0.85 | 0.95 | 37 | empty |
| 3 | 267 | 0.85 | 0.95 | 34 | empty |
| 4 | 234 | 0.85 | 0.96 | 37 | empty |
| 5 | 638 | 0.78 | 0.84 | 71 | empty |
Interfaces
33 interfaces between chains.
- E–F · 2148 Ų buried · 5 hydrogen bonds · protein-protein
- A–F · 1985 Ų buried · 4 hydrogen bonds · protein-protein
- B–C · 1914 Ų buried · 1 hydrogen bond · protein-protein
- A–B · 1911 Ų buried · 0 hydrogen bonds · protein-protein
- C–D · 1846 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 6S3R · Structure of the FliPQR complex from the flagellar type 3 secretion system of Pseudomonas… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q48GF5
- Every structure of UniProt A0A0P9WRJ4
- Every structure of UniProt Q48GF6
- Elsewhere: RCSB PDB 6S3R · PDBe 6S3R · UniProt Q48GF5 · UniProt A0A0P9WRJ4 · UniProt Q48GF6
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