Research workbench
Structure of the core of the flagellar export apparatus from vibrio mimicus, the flipqr-flhb complex.
Analyse Structure of the core of the flagellar export apparatus from vibrio mimicus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6S3L
- Type
- protein
- Length
- 1,768 residues
- Chains
- 11
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Flagellar biosynthetic protein flip; Flagellar biosynthetic protein flir; Flagellar…
- UniProt
- A0A2J9UXT5, A0A1D8S9I5, A0A1D8S9F5, A0A1D8S9F8
- Pockets
- 20 · best druggability 0.85
Structure
electron microscopy · 8 distinct chains · 72% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Flagellar biosynthetic protein flip | protein | 191 | 69% helix, 0% strand | A0A2J9UXT5 |
| B | Flagellar biosynthetic protein flip | protein | 195 | 73% helix, 0% strand | A0A2J9UXT5 |
| C | Flagellar biosynthetic protein flip | protein | 196 | 67% helix, 0% strand | A0A2J9UXT5 |
| D | Flagellar biosynthetic protein flip | protein | 194 | 71% helix, 0% strand | A0A2J9UXT5 |
| E | Flagellar biosynthetic protein flip | protein | 192 | 74% helix, 0% strand | A0A2J9UXT5 |
| F | Flagellar biosynthetic protein flir | protein | 251 | 71% helix, 0% strand | A0A1D8S9I5 |
| G, H, I, J | Flagellar biosynthetic protein fliq | protein | 89 | 83% helix, 0% strand | A0A1D8S9F5 |
| K | Flagellar biosynthetic protein flhb | protein | 193 | 74% helix, 0% strand | A0A1D8S9F8 |
Pockets
20 pockets found on a 1 Å grid, 13 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 238 | 0.85 | 0.97 | 36 | empty |
| 2 | 240 | 0.85 | 0.97 | 37 | empty |
| 3 | 244 | 0.85 | 0.96 | 39 | empty |
| 4 | 367 | 0.80 | 0.89 | 36 | empty |
| 5 | 720 | 0.80 | 0.83 | 47 | empty |
Interfaces
41 interfaces between chains.
- E–F · 2144 Ų buried · 6 hydrogen bonds · protein-protein
- A–B · 2045 Ų buried · 7 hydrogen bonds · protein-protein
- B–C · 2006 Ų buried · 6 hydrogen bonds · protein-protein
- A–F · 1979 Ų buried · 5 hydrogen bonds · protein-protein
- C–D · 1933 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 6S3L · Structure of the core of the flagellar export apparatus from Vibrio mimicus, the… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2J9UXT5
- Every structure of UniProt A0A1D8S9I5
- Every structure of UniProt A0A1D8S9F5
- Every structure of UniProt A0A1D8S9F8
- Elsewhere: RCSB PDB 6S3L · PDBe 6S3L · UniProt A0A2J9UXT5 · UniProt A0A1D8S9I5 · UniProt A0A1D8S9F5 · UniProt A0A1D8S9F8
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