Research workbench
Structure of HIV-1 CACSP1NC MUTANT(W41A,M42A) interacting with maturation inhibitor EP39
Analyse Structure of HIV-1 CACSP1NC MUTANT(W41A,M42A) interacting with maturation… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6RWG
- Type
- protein
- Length
- 157 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gag polyprotein
- UniProt
- E7DAY8
- Ligands
- ZN
- Pockets
- 2 · best druggability 0.44
Structure
solution nmr · 1 distinct chain · 48% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Gag polyprotein | protein | 157 | 48% helix, 0% strand | E7DAY8 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 201 | 0.44 | 0.73 | 25 | empty |
| 2 | 92 | 0.35 | 0.73 | 15 | empty |
Compared structures
- 6RWG · Structure of HIV-1 CAcSP1NC mutant(W41A,M42A) interacting with maturation inhibitor EP39 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E7DAY8
- Elsewhere: RCSB PDB 6RWG · PDBe 6RWG · UniProt E7DAY8
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