Research workbench
Cryo-EM structure of yersinia pseudotuberculosis tcaa-tcab
Analyse Cryo-EM structure of yersinia pseudotuberculosis tcaa-tcab in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6RWB
- Type
- protein
- Length
- 9,365 residues
- Chains
- 5
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- TOXIN,TOXIN complex subunit TCAB,PUTATIVE toxin subunit, putative toxin…
- Pockets
- 20 · best druggability 0.86
Structure
electron microscopy · 1 distinct chain · 48% helix, 7% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E | TOXIN,TOXIN complex subunit TCAB,PUTATIVE toxin subunit, putative toxin SUBUNIT,TOXIN,TOXIN complex subunit TCAB,PUTATIVE toxin SUBUNIT,PUTATIVE toxin SUBUNIT,TOXIN,TOXIN complex subunit TCAB,PUTATIVE toxin SUBUNIT,PUTATIVE toxin SUBUNIT,TOXIN,TOXIN complex subunit TCAB,PUTATIVE toxin SUBUNIT,PUTATIVE toxin subunit | protein | 1873 | 48% helix, 7% strand | — |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1107 | 0.86 | 0.87 | 147 | empty |
| 2 | 869 | 0.84 | 0.86 | 100 | empty |
| 3 | 845 | 0.83 | 0.85 | 88 | empty |
| 4 | 997 | 0.82 | 0.83 | 93 | empty |
| 5 | 708 | 0.81 | 0.85 | 63 | empty |
Interfaces
10 interfaces between chains.
- B–C · 11480 Ų buried · 116 hydrogen bonds · protein-protein
- A–B · 11470 Ų buried · 116 hydrogen bonds · protein-protein
- C–D · 11470 Ų buried · 117 hydrogen bonds · protein-protein
- A–E · 11468 Ų buried · 115 hydrogen bonds · protein-protein
- D–E · 11467 Ų buried · 116 hydrogen bonds · protein-protein
Compared structures
- 6RWB · Cryo-EM structure of Yersinia pseudotuberculosis TcaA-TcaB · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6RWB · PDBe 6RWB
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.