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Cryo-EM structure of morganella morganii TCDA4

Analyse Cryo-EM structure of morganella morganii TCDA4 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6RW9
Type: protein
Length: 11,425 residues
Chains: 5
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Insecticidal toxin protein TCDA4
Pockets: 20 · best druggability 0.84

Structure

electron microscopy · 1 distinct chain · 42% helix, 14% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E	Insecticidal toxin protein TCDA4	protein	2285	42% helix, 14% strand	—

Pockets

20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	929	0.84	0.86	109	empty
2	879	0.84	0.86	102	empty
3	854	0.84	0.86	110	empty
4	825	0.84	0.86	99	empty
5	848	0.84	0.86	91	empty

Interfaces

10 interfaces between chains.

A–E · 10797 Å² buried · 99 hydrogen bonds · protein-protein
D–E · 10769 Å² buried · 100 hydrogen bonds · protein-protein
C–D · 10730 Å² buried · 104 hydrogen bonds · protein-protein
A–B · 10708 Å² buried · 102 hydrogen bonds · protein-protein
B–C · 10697 Å² buried · 101 hydrogen bonds · protein-protein

Compared structures

6RW9 · Cryo-EM structure of Morganella morganii TcdA4 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6RW9 · PDBe 6RW9

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