Research workbench
L-[RU(PHEN)2(11-NO2-DPPZ)]2+ bound to the oligonucleotide sequence D(TCGGCGCCGA)
Analyse L-[RU(PHEN)2(11-NO2-DPPZ)]2+ bound to the oligonucleotide sequence D(TCGGCGCCGA) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6RSP
- Type
- DNA
- Length
- 20 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3')
- Ligands
- KHK, BA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | DNA (5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3') | dna | 10 | — | — |
Ligands and binding sites
- KHK · Ruthenium (bis-(phenanthroline)) (11-nitro-dipyridophenazine) · ligand · 2 copies · chains A, B
- BA · Barium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 462 Ų buried · 40 hydrogen bonds · nucleic-nucleic
Compared structures
- 6RSP · L-[Ru(phen)2(11-NO2-dppz)]2+ bound to the Oligonucleotide sequence d(TCGGCGCCGA) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6RSP · PDBe 6RSP
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