Research workbench
Crystal structure of the N-terminal hth DNA-binding domain of the essential repressor ddro from radiation-resistant deinococcus bacteria (deinococcus deserti)
Analyse Crystal structure of the N-terminal hth DNA-binding domain of the essential… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6RNZ
- Type
- protein
- Length
- 132 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hth-type transcriptional regulator ddroc
- UniProt
- C1CYP4
- Pockets
- 1 · best druggability 0.40
Structure
x-ray diffraction · 1 distinct chain · 65% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Hth-type transcriptional regulator ddroc | protein | 66 | 65% helix, 0% strand | C1CYP4 |
Ligands and binding sites
- GOL · Glycerol · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 88 | 0.40 | 0.78 | 18 | GOL |
Interfaces
1 interface between chains.
- A–B · 349 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 6RNZ · Crystal structure of the N-terminal HTH DNA-binding domain of the essential repressor… · the same entry in another collection · chain A against A, TM-score 1.00
- C1CYP4 · AlphaFold monomer V2.0 prediction for hth-type transcriptional regulator ddroc (C1CYP4) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C1CYP4
- Elsewhere: RCSB PDB 6RNZ · PDBe 6RNZ · UniProt C1CYP4
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