Research workbench
Ppta from streptomyces chartreusis
Analyse Ppta from streptomyces chartreusis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6RN5
- Type
- protein
- Length
- 283 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chad domain protein
- UniProt
- A0A2N9BBV4
- Ligands
- CU, SO4, CL, CO3
- Pockets
- 4 · best druggability 0.59
Structure
x-ray diffraction · 1 distinct chain · 79% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Chad domain protein | protein | 283 | 79% helix, 1% strand | A0A2N9BBV4 |
Ligands and binding sites
- CU · Copper (II) ion · metal · 2 copies · chains A
- SO4 · Sulfate ion · ion · 4 copies · chains A
- CL · Chloride ion · ion · 2 copies · chains A
- CO3 · Carbonate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 359 | 0.59 | 0.76 | 40 | SO4 |
| 2 | 86 | 0.40 | 0.78 | 17 | empty |
| 3 | 56 | 0.30 | 0.75 | 14 | CL |
| 4 | 61 | 0.28 | 0.74 | 13 | empty |
Compared structures
- 6RN5 · PptA from Streptomyces chartreusis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2N9BBV4
- Elsewhere: RCSB PDB 6RN5 · PDBe 6RN5 · UniProt A0A2N9BBV4
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