Molybdenum storage protein under turnover conditions

Structure

electron microscopy · 2 distinct chains · 40% helix, 14% strand (DSSP).

Ligands and binding sites

• ATP · Adenosine-5'-triphosphate · ligand · 12 copies · chains A, B, C, D, E, F, G, H, I, J, K, L
• 8M0 · bis(mu4-oxo)-tetrakis(mu3-oxo)-hexakis(mu2-oxo)-hexadecaoxo-octamolybdenum (VI) · ligand · 12 copies · chains A, B, C, D, E, F, G, H, I, J, K, L
• J8E · oxidanyl-[[2,2,4,4,4-pentakis($l^{1}-oxidanyl)-1-(oxidanylmolybdenio)-1$l^{3},3-dioxa-2$l^{5},4$l^{5}-dimolybdacyclobut-2-yl]oxy]molybdenum · ligand · 12 copies · chains A, E, B, D, F, C, G, I, H, J, L, K
• OMO · Mo(vi)(=o)(oh)2 cluster · ligand · 6 copies · chains A, C, E, G, I, K
• MG · Magnesium ion · metal · 6 copies · chains A, C, E, G, I, K
• MOO · Molybdate ion · ion · 42 copies · chains A, B, C, F, D, E, G, H, K, J, I, L

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.

Interfaces

36 interfaces between chains.

• A–B · 3337 Ų buried · 31 hydrogen bonds · protein-protein
• C–D · 3336 Ų buried · 31 hydrogen bonds · protein-protein
• I–J · 3334 Ų buried · 31 hydrogen bonds · protein-protein
• G–H · 3331 Ų buried · 31 hydrogen bonds · protein-protein
• K–L · 3325 Ų buried · 31 hydrogen bonds · protein-protein

Compared structures

• 6RKD · Molybdenum storage protein under turnover conditions · the same entry in another collection · chain L against L, TM-score 1.00

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt P84308
• Every structure of UniProt P84253
• Elsewhere: RCSB PDB 6RKD · PDBe 6RKD · UniProt P84308 · UniProt P84253