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Structure of virulence factor sgha from agrobacterium tumefaciens

Analyse Structure of virulence factor sgha from agrobacterium tumefaciens in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6RJK
Type: protein
Length: 903 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Beta-glucosidase
EC: 3.2.1.21
UniProt: A0A2I4PGZ0
Pockets: 7 · best druggability 0.77

Structure

x-ray diffraction · 2 distinct chains · 45% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Beta-glucosidase (EC 3.2.1.21)	protein	454	45% helix, 16% strand	A0A2I4PGZ0
B	Beta-glucosidase (EC 3.2.1.21)	protein	449	46% helix, 16% strand	A0A2I4PGZ0

Pockets

7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	225	0.77	0.91	29	empty
2	433	0.68	0.79	48	empty
3	399	0.67	0.80	49	empty
4	89	0.41	0.78	18	empty
5	84	0.37	0.77	16	empty

Interfaces

1 interface between chains.

A–B · 1029 Å² buried · 13 hydrogen bonds · protein-protein

Compared structures

6RJK · Structure of virulence factor SghA from Agrobacterium tumefaciens · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A2I4PGZ0
Elsewhere: RCSB PDB 6RJK · PDBe 6RJK · UniProt A0A2I4PGZ0

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