Research workbench
N-domain P40/P90 mycoplasma pneumoniae
Analyse N-domain P40/P90 mycoplasma pneumoniae in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6RJ1
- Type
- protein
- Length
- 1,618 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mgp-operon protein 3
- UniProt
- Q50341
- Pockets
- 20 · best druggability 0.82
Structure
x-ray diffraction · 2 distinct chains · 16% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Mgp-operon protein 3 | protein | 812 | 16% helix, 31% strand | Q50341 |
| B | Mgp-operon protein 3 | protein | 806 | 16% helix, 31% strand | Q50341 |
Pockets
20 pockets found on a 1 Å grid, 14 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1027 | 0.82 | 0.83 | 84 | empty |
| 2 | 1179 | 0.81 | 0.83 | 104 | empty |
| 3 | 479 | 0.66 | 0.78 | 39 | empty |
| 4 | 319 | 0.61 | 0.78 | 36 | empty |
| 5 | 83 | 0.60 | 0.89 | 25 | empty |
Interfaces
1 interface between chains.
- A–B · 519 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q50341
- Elsewhere: RCSB PDB 6RJ1 · PDBe 6RJ1 · UniProt Q50341
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