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Crystal structure of mchdnab-1 intein (N145AA)

Analyse Crystal structure of mchdnab-1 intein (N145AA) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6RIY
Type: protein
Length: 261 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Replicative DNA helicase
EC: 3.6.4.12
UniProt: A0A220Y4A5
Ligands: CL
Pockets: 1 · best druggability 0.75

Structure

x-ray diffraction · 2 distinct chains · 3% helix, 49% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Replicative DNA helicase (EC 3.6.4.12)	protein	130	5% helix, 50% strand	A0A220Y4A5
B	Replicative DNA helicase (EC 3.6.4.12)	protein	131	2% helix, 47% strand	A0A220Y4A5

Ligands and binding sites

CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	90	0.75	0.97	20	empty

Interfaces

1 interface between chains.

A–B · 608 Å² buried · 11 hydrogen bonds · protein-protein

Compared structures

6RIY · Crystal structure of MchDnaB-1 intein (N145AA) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A220Y4A5
Elsewhere: RCSB PDB 6RIY · PDBe 6RIY · UniProt A0A220Y4A5

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