Research workbench
Structure of pediococcus acidilactici putative lactate oxidase wt protein
Analyse Structure of pediococcus acidilactici putative lactate oxidase wt protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6RHT
- Type
- protein
- Length
- 369 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative L-lactate oxidase
- EC
- 1.1.99.-
- UniProt
- E0NE46
- Ligands
- FMN
- Pockets
- 4 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative L-lactate oxidase (EC 1.1.99.-) | protein | 369 | 44% helix, 14% strand | E0NE46 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 419 | 0.76 | 0.85 | 53 | FMN, GOL |
| 2 | 178 | 0.52 | 0.78 | 28 | empty |
| 3 | 79 | 0.41 | 0.79 | 17 | empty |
| 4 | 50 | 0.28 | 0.75 | 16 | empty |
Compared structures
- 6RHT · Structure of Pediococcus acidilactici putative lactate oxidase WT protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E0NE46
- Elsewhere: RCSB PDB 6RHT · PDBe 6RHT · UniProt E0NE46
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