Research workbench
Structure of the double mutant (L6M; F134M, semet form) of yqgf from escherichia COLI, a hypothetical protein
Analyse Structure of the double mutant (L6M; F134M, semet form) of yqgf from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1NU0
- Type
- protein
- Length
- 251 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein yqgf
- UniProt
- P0A8I1
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.61
Structure
x-ray diffraction · 2 distinct chains · 33% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein yqgf | protein | 131 | 34% helix, 33% strand | P0A8I1 |
| B | Hypothetical protein yqgf | protein | 120 | 33% helix, 35% strand | P0A8I1 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 287 | 0.61 | 0.79 | 38 | SO4 |
Interfaces
1 interface between chains.
- A–B · 522 Ų buried · 7 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 7 modified (engineered).
Compared structures
- 1NU0 · Structure of the double mutant (L6M; F134M, SeMet form) of yqgF from Escherichia coli, a… · the same entry in another collection · chain A against A, TM-score 1.00
- P0A8I1 · AlphaFold monomer V2.0 prediction for putative pre-16S rRNA nuclease (P0A8I1) · a predicted model of the same protein · chain A against A, TM-score 0.90
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A8I1
- Elsewhere: RCSB PDB 1NU0 · PDBe 1NU0 · UniProt P0A8I1
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.