Research workbench
Photorhabdus asymbiotica lectin phl in complex with O-methylated pgl- 1-derived disaccharide
Analyse Photorhabdus asymbiotica lectin phl in complex with O-methylated pgl- 1-derived… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6RGW
- Type
- protein
- Length
- 344 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- C7BLE4
- Ligands
- K3Q, 7CV, K42, NA, CL
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 344 | — | C7BLE4 |
Ligands and binding sites
- K3Q · 3,6-O-dimethyl-D-glucose · ligand · 5 copies · chains A
- 7CV · 6-deoxy-2,3-di-O-methyl-alpha-L-mannopyranose · ligand · 2 copies · chains A
- K42 · 4-(2-azanylethoxy)phenol · ligand · chains A
- NA · Sodium ion · metal · 2 copies · chains A
- CL · Chloride ion · ion · chains A
- EDO · 1,2-ethanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6RGW · Photorhabdus asymbiotica lectin PHL in complex with O-methylated PGL-1-derived… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C7BLE4
- Elsewhere: RCSB PDB 6RGW · PDBe 6RGW · UniProt C7BLE4
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