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Photorhabdus laumondii lectin PLL2 in complex with L-rhamnose

Analyse Photorhabdus laumondii lectin PLL2 in complex with L-rhamnose in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6RG1
Type: protein
Length: 340 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lectin PLL2 from photorhabdus laumondii
UniProt: Q7N8I8
Ligands: RM4, NA
Pockets: 1 · best druggability 0.79

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 49% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lectin PLL2 from photorhabdus laumondii	protein	340	0% helix, 49% strand	Q7N8I8

Ligands and binding sites

RM4 · beta-L-rhamnopyranose · ligand · chains A
NA · Sodium ion · metal · 6 copies · chains A
ACT · Acetate ion · additive · 6 copies · chains A
EDO · 1,2-ethanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	588	0.79	0.84	38	empty

Compared structures

6RG1 · Photorhabdus laumondii lectin PLL2 in complex with L-rhamnose · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7N8I8
Elsewhere: RCSB PDB 6RG1 · PDBe 6RG1 · UniProt Q7N8I8

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