Research workbench
Crystal structure of the OMPK36 clinical isolate ST258 from klebsiella pneumonia
Analyse Crystal structure of the OMPK36 clinical isolate ST258 from klebsiella pneumonia in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6RCP
- Type
- protein
- Length
- 6,282 residues
- Chains
- 18
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- OMPK36
- UniProt
- E5G6G2
- Pockets
- 20 · best druggability 0.84
Structure
x-ray diffraction · 1 distinct chain · 5% helix, 57% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, E, G, H, I, K, L, N, O, P, Q, R, F, D, J, M, C | OMPK36 | protein | 349 | 5% helix, 57% strand | E5G6G2 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 192 | 0.84 | 0.97 | 26 | empty |
| 2 | 208 | 0.84 | 0.96 | 26 | empty |
| 3 | 193 | 0.84 | 0.97 | 26 | empty |
| 4 | 214 | 0.83 | 0.96 | 30 | empty |
| 5 | 646 | 0.83 | 0.88 | 30 | empty |
Interfaces
34 interfaces between chains.
- P–R · 1763 Ų buried · 28 hydrogen bonds · protein-protein
- E–C · 1723 Ų buried · 30 hydrogen bonds · protein-protein
- Q–R · 1721 Ų buried · 28 hydrogen bonds · protein-protein
- D–C · 1709 Ų buried · 33 hydrogen bonds · protein-protein
- G–I · 1706 Ų buried · 26 hydrogen bonds · protein-protein
Compared structures
- 6RCP · Crystal structure of the OmpK36 clinical isolate ST258 from Klebsiella pneumonia · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E5G6G2
- Elsewhere: RCSB PDB 6RCP · PDBe 6RCP · UniProt E5G6G2
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