Research workbench

P1 mycoplasma pneumoniae

Analyse P1 mycoplasma pneumoniae in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6RC9
Type: protein
Length: 1,339 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Adhesin P1
UniProt: P11311
Pockets: 20 · best druggability 0.74

Structure

x-ray diffraction · 1 distinct chain · 21% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Adhesin P1	protein	1339	21% helix, 20% strand	P11311

Pockets

20 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	804	0.74	0.79	66	empty
2	50	0.72	0.99	16	empty
3	543	0.70	0.79	42	empty
4	352	0.63	0.79	51	empty
5	341	0.62	0.78	26	empty

Compared structures

6RC9 · P1 Mycoplasma pneumoniae · the same entry in another collection · chain A against A, TM-score 1.00
P11311 · AlphaFold monomer V2.0 prediction for adhesin P1 (P11311) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P11311
Elsewhere: RCSB PDB 6RC9 · PDBe 6RC9 · UniProt P11311

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