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Structural analysis of the salmonella type III secretion system ATPase invc

Analyse Structural analysis of the salmonella type III secretion system ATPase invc in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6RAE
Type: protein
Length: 352 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Secretory apparatus ATP synthase (associated with virulence)
UniProt: A0A0H3NGZ8
Ligands: CL
Pockets: 5 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 45% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Secretory apparatus ATP synthase (associated with virulence)	protein	352	45% helix, 21% strand	A0A0H3NGZ8

Ligands and binding sites

CL · Chloride ion · ion · 2 copies · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	262	0.61	0.80	21	GOL
2	66	0.35	0.77	18	empty
3	55	0.34	0.78	15	empty
4	51	0.28	0.75	19	empty
5	54	0.26	0.74	14	empty

Compared structures

6RAE · Structural analysis of the Salmonella type III secretion system ATPase InvC · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0H3NGZ8
Elsewhere: RCSB PDB 6RAE · PDBe 6RAE · UniProt A0A0H3NGZ8

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