Research workbench
Structure of the sbp fpvc from pseudomonas aeruginosa in complex with FE(II)
Analyse Structure of the sbp fpvc from pseudomonas aeruginosa in complex with FE(II) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6R5S
- Type
- protein
- Length
- 540 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Adhesion protein
- UniProt
- A0A069PX18
- Ligands
- FE2
- Pockets
- 5 · best druggability 0.41
Structure
x-ray diffraction · 2 distinct chains · 45% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Adhesion protein | protein | 271 | 45% helix, 12% strand | A0A069PX18 |
| B | Adhesion protein | protein | 269 | 45% helix, 12% strand | A0A069PX18 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 63 | 0.41 | 0.81 | 14 | EDO |
| 2 | 57 | 0.38 | 0.80 | 16 | empty |
| 3 | 54 | 0.33 | 0.78 | 11 | empty |
| 4 | 72 | 0.32 | 0.75 | 16 | empty |
| 5 | 50 | 0.25 | 0.74 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 450 Ų buried · 10 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 6R5S · Structure of the SBP FpvC from pseudomonas aeruginosa in complex with Fe(II) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A069PX18
- Elsewhere: RCSB PDB 6R5S · PDBe 6R5S · UniProt A0A069PX18
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