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Structure of P110 from mycoplasma genitalium at 2.7A

Analyse Structure of P110 from mycoplasma genitalium at 2.7A in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6R3T
Type: protein
Length: 887 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Mgp-operon protein 3
UniProt: P22747
Ligands: K, PO4
Pockets: 9 · best druggability 0.81

Structure

x-ray diffraction · 1 distinct chain · 16% helix, 32% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Mgp-operon protein 3	protein	887	16% helix, 32% strand	P22747

Ligands and binding sites

K · Potassium ion · metal · 2 copies · chains A
PO4 · Phosphate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

9 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1055	0.81	0.82	102	empty
2	274	0.54	0.75	37	empty
3	74	0.49	0.84	23	empty
4	118	0.46	0.78	22	empty
5	75	0.39	0.78	15	empty

Compared structures

6R3T · Structure of P110 from Mycoplasma Genitalium at 2.7A · the same entry in another collection · chain A against A, TM-score 1.00
P22747 · AlphaFold monomer V2.0 prediction for mgp-operon protein 3 (P22747) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P22747
Elsewhere: RCSB PDB 6R3T · PDBe 6R3T · UniProt P22747

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