Research workbench
Structure of porcine aichi virus polymerase
Analyse Structure of porcine aichi virus polymerase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6R1I
- Type
- protein
- Length
- 936 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Genome polyprotein
- UniProt
- B8R1T8
- Pockets
- 10 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Genome polyprotein | protein | 468 | 40% helix, 17% strand | B8R1T8 |
Pockets
10 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 335 | 0.60 | 0.77 | 33 | empty |
| 2 | 345 | 0.58 | 0.76 | 34 | empty |
| 3 | 325 | 0.56 | 0.76 | 34 | empty |
| 4 | 123 | 0.54 | 0.82 | 17 | empty |
| 5 | 121 | 0.53 | 0.81 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 116 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 6R1I · Structure of porcine Aichi virus polymerase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B8R1T8
- Elsewhere: RCSB PDB 6R1I · PDBe 6R1I · UniProt B8R1T8
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