Research workbench
X-ray structure of ybea from E.COLI. northeast structural genomics research consortium (nesg) target ER45
Analyse X-ray structure of ybea from E.COLI. northeast structural genomics research… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1NS5
- Type
- protein
- Length
- 308 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein ybea
- UniProt
- P0A8I8
- Pockets
- 2 · best druggability 0.71
Structure
x-ray diffraction · 2 distinct chains · 42% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein ybea | protein | 153 | 43% helix, 21% strand | P0A8I8 |
| B | Hypothetical protein ybea | protein | 155 | 41% helix, 21% strand | P0A8I8 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 320 | 0.71 | 0.84 | 45 | empty |
| 2 | 173 | 0.59 | 0.82 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 1133 Ų buried · 8 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 1NS5 · X-ray structure of ybea from E.COLI. northeast structural genomics research consortium… · the same entry in another collection · chain B against B, TM-score 1.00
- P0A8I8 · AlphaFold monomer V2.0 prediction for ribosomal RNA large subunit methyltransferase H… · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A8I8
- Elsewhere: RCSB PDB 1NS5 · PDBe 1NS5 · UniProt P0A8I8
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