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N-terminal domain of DNA replication protein dnab

Analyse N-terminal domain of DNA replication protein dnab in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1B79
Type: protein
Length: 410 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Dnab helicase
EC: 3.6.1.-
UniProt: P0ACB0

Structure

x-ray diffraction · 2 distinct chains · 71% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, C	Dnab helicase (EC 3.6.1.-)	protein	102	72% helix, 0% strand	P0ACB0
B, D	Dnab helicase (EC 3.6.1.-)	protein	103	71% helix, 0% strand	P0ACB0

Interfaces

3 interfaces between chains.

A–B · 528 Å² buried · 7 hydrogen bonds · protein-protein
B–D · 238 Å² buried · 3 hydrogen bonds · protein-protein
B–C · 12 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

1B79 · N-terminal domain of DNA replication protein dnab · the same entry in another collection · chain A against A, TM-score 1.00
P0ACB0 · AlphaFold monomer V2.0 prediction for replicative DNA helicase (P0ACB0) · a predicted model of the same protein · chain A against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0ACB0
Elsewhere: RCSB PDB 1B79 · PDBe 1B79 · UniProt P0ACB0

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