Research workbench
Crystal structure of T7 bacteriophage portal protein, 12MER, closed valve
Analyse Crystal structure of T7 bacteriophage portal protein, 12MER, closed valve in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6QX5
- Type
- protein
- Length
- 5,748 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Portal protein
- UniProt
- P03728
- Pockets
- 20 · best druggability 0.85
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L | Portal protein | protein | 479 | 47% helix, 11% strand | P03728 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 879 | 0.85 | 0.87 | 103 | empty |
| 2 | 869 | 0.85 | 0.87 | 98 | empty |
| 3 | 809 | 0.85 | 0.88 | 91 | empty |
| 4 | 654 | 0.85 | 0.90 | 72 | empty |
| 5 | 804 | 0.85 | 0.88 | 92 | empty |
Interfaces
24 interfaces between chains.
- E–F · 5892 Ų buried · 59 hydrogen bonds · protein-protein
- D–E · 5867 Ų buried · 56 hydrogen bonds · protein-protein
- I–J · 5845 Ų buried · 53 hydrogen bonds · protein-protein
- F–G · 5820 Ų buried · 55 hydrogen bonds · protein-protein
- G–H · 5814 Ų buried · 56 hydrogen bonds · protein-protein
Compared structures
- 6QX5 · Crystal structure of T7 bacteriophage portal protein, 12mer, closed valve · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03728
- Elsewhere: RCSB PDB 6QX5 · PDBe 6QX5 · UniProt P03728
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