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Crystal structure of a chad domain from chlorobium tepidum in complex with inorganic polyphosphate

Analyse Crystal structure of a chad domain from chlorobium tepidum in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6QVA
Type: protein
Length: 310 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Chad domain
UniProt: Q8KE09
Ligands: 9PI, 3PO, PO4
Pockets: 2 · best druggability 0.54

Structure

x-ray diffraction · 1 distinct chain · 81% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Chad domain	protein	310	81% helix, 1% strand	Q8KE09

Ligands and binding sites

9PI · Bis[oxidanyl-[oxidanyl-[oxidanyl(phosphonooxy) phosphoryl]oxy-phosphoryl]oxy-phosphoryl] hydrogen phosphate · ligand · chains A
3PO · Triphosphate · ligand · chains A
PO4 · Phosphate ion · ion · chains A
EDO · 1,2-ethanediol · additive · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	361	0.54	0.74	32	9PI
2	71	0.30	0.74	13	empty

Compared structures

6QVA · Crystal structure of a CHAD domain from Chlorobium tepidum in complex with inorganic… · the same entry in another collection · chain A against A, TM-score 1.00

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Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8KE09
Elsewhere: RCSB PDB 6QVA · PDBe 6QVA · UniProt Q8KE09

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